Is there any portal or application that accepts Seurat objects as input and lets me see genes’ expression across the clusters? Of course, my lab’s service provider can help using Seurat itself, but I need to come to them several times when I have a request. I am learning Seurat, but it would be nice to have a tool that supports it upfront without command lines.
Hi Jaliu, you can try out BioTuring Browser (www.bioturing.com/bbrowser). The software takes in Seurat and Scanpy objects for visualization (keeping the same t-SNE or UMAP coordinates you have created using such tools) and extra analyses like marker finding, composition and differential expression analysis.
Hi Jaliu, you can try out BioTuring Browser (www.bioturing.com/bbrowser). The software takes in Seurat and Scanpy objects for visualization (keeping the same t-SNE or UMAP coordinates you have created using such tools) and extra analyses like marker finding, composition and differential expression analysis.
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