I am using fresh-frozen tissue from P301L tau mice. I'm homogenizing 1 hemi in 1mL diluted RIPA (with dH20) with protease/phosphatase inhibitors. After centrifuging I take the supernatants and run the BCA assay to determine how much protein to load in the wells. I'm using 4-12% bis tris nupage gels. My primary is PHF-1 which I used at a 1:500 dilution. I also used GAPDH and then an appropriate secondary which was at a 1:5000 dilution.
The first western I ran with these samples clearly showed some bands, but the blot looked like someone took a fork and scratched away at it. I'm assuming something happened with the chemiluminescence but once I redid that I lost whatever might have been there.
I'm not sure where to begin with troubleshooting and haven't received too much insight thus far. Anyone have any ideas on what might be going on here?