Hello, I am using the amber software to perform the MD Simulation of both glyco and phospho lipids while using the amber software here in the xleap I face the issue when I use the script solvateBox filename TIP3PBOX { 2 0 0 } so water molecules goes inside of the molecules so my question is that how to fix this problem because it's against of natural process like water will come to the hydrophilic part rather than tails. I have already attached the snapshot.

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