After blind docking between a protein and a ligand with ADT , i can not see the interactions, i just receive a memory error. whats the problem?

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Zahra Askari

Yes, i did it . i want to see the interactions just in autodock tools and take an image from them. i have received binding energies, but in ADT options there is no interactions such as hydrogen bindings or hydrophobic, pi-cation and pi-pi bindings and a memory error occurs.

Qazi Mohammad Sajid Jamal

yes i repeated blind docking again and again by trying different ligands on the same protein

Thank you very much for your response. and what about other kinds of interactions? is there any pi-pi or pi-cation bindings?