Fatal error when using pdbgmx to run NRAS bound with GTP using GROMACS 4.6.7?

I have tried to run simulation for protein complex of NRAS(5UHV) bound with Mg and GTP. However I have encountered the following error while using pdb2gmx: Program pdb2gmx, VERSION...

18 December 2019 2,246 3 View

How to get vehicle count and dataset from any one Toll plaza in India, or my research?

I wish to collect real time traffic in India. Is it feasible to get such data through any toll gate ?

04 May 2019 8,521 3 View

What is the best method to mass rear rice yellow stem borer?

Dear delegates I wish to get some information on rearing techniques of rice yellow stem borer. I started doing the same on natural host. But i face difficult and also feel cumbersome in doing mass...

02 July 2017 9,959 25 View

How to solve mixed level design in Minitab 17?

To Solve mixed level design with 3 factors and factor 1(6 level), factor 2(5level), factor3(4-level), I have used Minitab general design Full factorial -with 2 replications, totally 240...

01 February 2017 9,282 9 View

What is the standard method to perform insilico mutagenesis?

28 July 2015 9,677 4 View

What is the importance of the shape and size of the simulation box in a molecular dynamic simulation?

13 May 2015 2,676 4 View

How to extract DNA from Aspergillus spp. grown on solid medium?

Protocol for DNA extraction

11 July 2013 478 6 View

What software programs can directly simulate Additive Manufacturing Directed Energy Deposition (DED)?

I understand there are a lot of software programs that can simulate DED by going through specific modeling, simulation, and commands. For me, that was time consuming and results were not accurate....

24 February 2021 4,428 3 View

I am looking for a simple software program to model 3D chemical bonds. The purpose is to generate high-quality graphical abstracts. Any suggestion?

Hello everyone: I am looking for a simple software program to model chemical bonds. The purpose is to generate a high-quality graphical abstract for a top leading journal in the field of...

23 February 2021 8,012 3 View

Which programs are to be used to register 2D image onto a 3D image data set?

I am trying to register a light micrograph onto a 3D CT data set, as I want to extract the corresponding image from the CT data set. Is there any software or program can do this accurately? I am...

21 February 2021 8,220 3 View

What is the better software for approximation of 3D surface with equations?

I have a massive of x, y, z coordinates of 2D surface in 3D space, which builded in Ansys HFSS or AutoCAD. How can I get the analitical aproximation of this surface by formulas?

21 February 2021 3,444 7 View

How can I obtain Reaction Forces in ABAQUS?

I am trying to simulate a simplified version of a beam resting on 10 points using Abaqus. The solutions I want to obtain are the Reaction Forces in each resting point or area when applying a...

21 February 2021 3,075 2 View

How to convert 2D stack images to 3D to obtain surface area of nucleus?

I have 15 slices of the nucleus at different z-heights from confocal imaging. I would like to use these slices to reconstruct the 3D nucleus and ultimately estimate the surface area of the...

20 February 2021 6,967 1 View

How to get the vector of a specific vibration mode in phonon dispersion?

For example, I have this phonon dispersion(Fig. 1), and now I would like get vector of atoms which describes TA1 in P. I know v_sim can show vibrational animation of specific mode, but I do not...

20 February 2021 4,332 4 View

Has anyone used deep learning for 2D/3D REGISTRATION ?

I am a Master student in Biomedical (Bio-electrical) Engineering and work on " 2D-3D registration ( CT and X-Ray) as my thesis. I created DRR from CT and want use CNN( Convolutional Neural...

19 February 2021 6,354 3 View

PV system design. 3d modelling and Analysis?

I have been looking for a good cost-effective tool for 3D modelling a glass-glass solar module system. I was initially considering Skelion as a tool but it does not look very promising, a bit...

13 February 2021 8,126 1 View

3D visualization of MRI images on a web browser?

Hello, would you have recommendations for the best technical solution (open code) to ensure 3D visualization of MRI slice images on a web browser? A solution that will allow users to rotate the...

10 February 2021 6,299 1 View