7 Questions 9 Answers 0 Followers
Questions related from Sharmi Mazumder
Hello all, Does anyone know how to generate LAMMPS Data files from material studio Coarse grained beads? I generated a CG model using material studio's Mesocite Module. But, I am not able to...
24 March 2022 505 4 View
Hi, I want to perform the coarse grained simulation of cellulose in LAMMPS using martini force field. But I do not know how to set the potential parameter in LAMMPS input file. Please give me some...
02 February 2022 767 4 View
Hi all, How to calculate bond energy between two atoms using DFT calculations in material studio? Do you have any idea how to do that? Which module should I use for this? Thanks in...
29 June 2021 6,829 7 View
How to assign atomic charges on bio-molecules which were built by a Glycam Carbohydrate builder? The (.pdb) files generated by carbo-builder are without charges of the atom,? Any help would be...
04 December 2020 9,074 1 View
I have generated a model of cellulose bundles using a toolkit named cellulose builder. As an output, it has given (.pdb) and (.psf) files. When I have imported these (.pdb) files into AMBER, it...
29 October 2020 9,192 1 View
Hi all, I am performing steered molecular dynamics simulation of two polymer chains parallel to each other. Then, one chain has pulled using constant velocity and the trajectory I got is...
24 July 2020 7,918 2 View
Hi All, I have build the model of cellulose polymer using xleap and hemicellulose polymer using glycam carbohydrate builder. Now, I need to place the two polymer chain parallel two each other....
21 May 2020 9,530 1 View