I have generated a model of cellulose bundles using a toolkit named cellulose builder. As an output, it has given (.pdb) and (.psf) files. When I have imported these (.pdb) files into AMBER, it says that some atoms are not in the residue templates.
Could you please give me any suggestion regarding this issue?
How may I import (.pdb) files into xleap of AMBER generated by cellulose builder?
If there is any command, please share it with me.
Thank you!
Regards,
Sharmi
Hi Sharmi,
If you have specific .pdb files then you can load it in xleap by this command -
"X=loadpdb a.pdb " then open it by "edit X" command in xleap
You can look at this link-http://ambermd.org/tutorials/pengfei/ or may be in this link also -https://ambermd.org/tutorials/basic/tutorial1/section2.htm
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