Braulio Mark Valencia

3 Questions 6 Answers 0 Followers

Questions related from Braulio Mark Valencia

How to find biologic effect of specific mutations in Dengue genomes (i.e. aminoacid level or antigenic properties once folded)?

Hi all! I have found specific mutations in dengue genome sequences apparently related to the infection outcome. Here my questions: How can I find if this mutation is synonymous or...

25 July 2022 3,110 2 View

Is cos2, coord, or contrib equivallent to loading when doing PCA?

Hi there, I've been using FactoMineR to run PCA. I tried other packages but due to the nature of my data, this is the most suitable. I have done PCA in Stata and the individual scores (loadings?)...

17 April 2022 2,451 6 View

How can I create my PED/MAP files for PLink from scratch?

Hello everybody! I'm working in a candidate gene association study, and I'm planning to use PLINK for that purpose. My samples have been sequenced, but the report just provided me with the list of...

06 August 2019 2,699 3 View