18 Questions 58 Answers 0 Followers
Questions related from Ahasan Habib
Maximum-likelihood (ML) tree based on GTR, why we choose this GTR mode to construct a phylogenetic tree? Could anybody explain it with ref/article if there is any? I may find answer in Nei and...
04 April 2016 8,286 10 View
Hi, Could you please clarify this query: if 426bp amplified for mtDNA D-loop (control region) and after editing/trimming primers finally get about 419 or 400bp. So is it correct if proceed final...
10 October 2014 7,934 4 View
Hi, is there any software to trim off primer sequence from sequence (full length sequence). Is it possible to do so using BioEdit? or is there any software to find/place primer sequence and trim...
10 October 2014 4,769 3 View
Hi, Would you please assist me, I need to double check. I use forward and reverse primers to get full length sequence. I amplified 426bp D-loop control region. But my full length sequence giving...
09 September 2014 2,429 10 View
Hi all, How to make sequence (DNA) in equal size after doing alignment in Clustal X? Sequence need to be equal size for Arlequin. thanks,
09 September 2014 5,552 13 View
I have been trying many times to perform Arlequin but following error message showing.. #[ERROR # 5] : haplotype already defined #[ERROR # 6] : unable to read sample data So where might be...
04 April 2014 5,834 6 View
Is there any calculation to estimate the expected number of migrant females between/among populations per generations (Nemf), or can this be estimated by software? I can estimate pairwise Fst...
03 March 2014 715 9 View
I was trying to see the population structure of my study species. I collected samples from one study area (Sea) from one place. I did sampling from a total of 4 study areas (Seas) from each sea...
03 March 2014 4,372 7 View
How to make or reconstruct a phylogeny tree like above? Is it possible to make ML/NJ tree by MEGA or which software can make one?
02 February 2014 3,207 6 View
I would like to take a DNA sequence from NCBI database with my samples' sequence as an outgroup to make a phylogenetic tree. so in this case, do I need to do alignment and eliminate that sequence...
02 February 2014 8,232 20 View
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02 February 2014 7,280 6 View
Also, how can you convert a fasta format file to rdf? Thanks.
02 February 2014 1,241 31 View
Anyone knows which software I can use to build a consensus phylogenetic tree? Thanks.
01 January 2014 7,577 2 View
Do we need to edit (i.e. fill the gap, nucleotide edit) sequence data after alignment or not?Needed for further analysis (run with Arlequin, MEGA etc). If needed to edit after alignment (I have...
12 December 2013 8,686 20 View
Except dnaSP and Collaps. I know about these two.
12 December 2013 2,033 2 View
To be more clear, I have 3 different markers that are all mtDNA (D-loop, cytb and 12s rRNA). I used them for the same fish species and want to analyze them all together. If you have any papers on...
12 December 2013 7,361 1 View
I am facing problem with PCR purification. I got good PCR band but after purification (by Qiagen purification kit) can't see good band in gel. Can anyone help? I want to sequence my sample.
11 November 2013 7,175 20 View
Hello, How i can know whether journals are in "scopus" indexed or no as i do not have access on scopus.com. Its also not mentioned indexing in the journal page, for example. Are all journals are...
01 January 1970 7,766 6 View
