Unless doing a simulation of hemoglobin, I rarely see references to dissolved oxygen or carbon dioxide. Are they so much insignificant in biomolecule interactions?
Miłosz Wieczór
Even a relatively large simulation box of, say, 10x10x10 nm, corresponds to a volume of only 10-21 dm3. As a result, anything found in concentration smaller than (roughly) 1 mM is fairly unlikely to be randomly enclosed in such a volume under physiological conditions. And even if it happened to be, there is very little chance that a single molecule will do something meaningful over the course of nano- to microseconds.
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