Anish Hiresha Verma , first, as Muhammad Ismail has asked, is the loaded drug crystalline? If not, you should see an amorphous (broad) peak at lower angles of 2(theta). Also, if you are able to grow a single crystal of your drug, you should be able to pull out its powder pattern from the analyzed single crystal data.
In XRD analysis, we have to mention that intensities of the structure is vital. After that, you said that your drugs material are crystalline, so in my opinion is your drugs concentration is far too small or is not successfully loaded into your nano-particles. Please justify this by doing a SEM-EDX analysis.
Is your drug is giving any peak when it's not loaded with nanoparticles, may be peak of nanoparticle is quite dominant and your drug peak is too small to visualize. So try doing XRD of drug without nanoparticles.