Hello everyone,

I am measuring mitochondrial superoxide with MitoSOX through FACS.

During the analysis with FlowJo, I noticed that in the first replicate, the histograms present two peaks (picture attached), contrarily to my two other experiments, showing a broad peak but not two different peaks (picture attached, MitoSOX 2).

Concurrently, the median obtained is a lot higher on the first replicate.

I'm very new to FACS data analysis and I would like to know if it is normal to get two peaks even after gating for viable cells, and if not, what can I do to correct it ?

Thank you in advance for your time

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