Good morning,

I have downloaded mRNA expression data (RSEM (Batch normalized from Illumina HiSeq_RNASeqV2) (log2(value + 1)) from cbioportal for one gene and I need to compare expression of this gene across cancer types. The most important comparison is not across all cancer types but across 5 cancer types.

I would like to know if there are significant differences in expression between different cancers.

Can you suggest which test is best? I am not convinced one way ANOVA is the best option.

Thank you!

Maria

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