Good morning,
I have downloaded mRNA expression data (RSEM (Batch normalized from Illumina HiSeq_RNASeqV2) (log2(value + 1)) from cbioportal for one gene and I need to compare expression of this gene across cancer types. The most important comparison is not across all cancer types but across 5 cancer types.
I would like to know if there are significant differences in expression between different cancers.
Can you suggest which test is best? I am not convinced one way ANOVA is the best option.
Thank you!
Maria