Hi every one,
I would like to simulation of a metal nano particle for molecular dynamics study if its interactions with membrane proteins. Is there software or server for simulation of metal nano particles?
There is a free molecular dynamics software named LAMMPS (http://lammps.sandia.gov) which can do all what you say.
However, you need some practice to use it.
Perhaps some commercial (and quite expensive) software can do something similar in a more 'friendly' way.
LAMMPS or simple Math labs dependind what is simulating
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