Which software like "Count" Csűrös, bioinformatics 2010 would you recommend?

19 June 2015 1 2K Report

For general purpose, for parcimony / phylostratigraphy.

If you want to map Dollo characters on a phylogenetic tree, you can use MacClade (you need an old Mac). Mesquite can also map characters a on a tree, but in a different way (maximum likelihood).

Badges
Science topic

More Ludovic Mallet's questions See All

Cold-drawn on P3HB-co-4HB ?

Hello everyone, one of the methods for cold-drawing films made by solvent casting is loosely hung weights. But how is this done, we hang weights on our sample and let it hang? How can we be sure...

28 February 2024 1,698 0 View

Mir-prefer failed on bam sorting ?

Hello, I am trying to run the pipeline MiR-PREFeR I have run the command pipeline and I have this error after the "Done sam2bam" I have this error : Error occurred when filtering regions and...

04 March 2020 6,126 3 View

Can I use the Nanodrop to mesure the Total protein level in H plasma?

Everything is in the question, I was thinking to do that: Centrifuge at 2000g 20 min the plasma samples to eliminate the lipids aggregates then process different dilution in milliQ (1:2 ; 1:4 ;...

30 July 2019 4,874 0 View

What is the clearance of amniotic fluid to meconium in sheep, in relation with pregnancy stage ?

i.e. how long does it take for the amniotic fluid to be fully renewed, taking into account all the different kind of fluxes, and terminal accumulation of modified amniotic fluid as part of the...

17 March 2015 4,776 1 View

Did anybody test the Quick-gDNA™ MiniPrep from Zymo Research to extract cell free circulating DNA from Plasma/Serum?

Hi, As written in the title: did anybody tested the Quick-gDNA™ MiniPrep from Zymo Research to extract cell free circulating DNA from Plasma/Serum? I'm currently using the circulating DNA kit...

17 December 2014 1,762 1 View

GC-MS retention index prediticon?

Hello experts, Does anyone know any free software about retention index prediction ?

08 August 2024 7,403 2 View

Can anyone provide me with molecular docking softwares/ websites?

Molecular docking software/ websites?

02 August 2024 8,704 7 View

I am working on my Master's thesis on the biogeography of the genus Ruagea and I would like to ask, could someone help me to check whether my result?

I created a file with my outgroup and ingroup species using Beauti, ran it in BEAST, viewed it in Tracer, and then used TreeAnnotator to create a file that I imported into RASP. Could someone...

28 July 2024 2,979 1 View

Which software tools are best for enhancing diagnostic accuracy in chest X-ray imaging using image reconstruction and neural networks?

I am reaching out to seek your valuable advice and recommendations regarding the best software tools to use for this research. Specifically, I am looking for software with a user-friendly...

22 July 2024 3,794 1 View

How to test multivariate outlier in STATA?

Hey all, I need help testing for multivariate outliers using STATA for my master thesis. The literature recommends the Minimum Covariance Determinant (MCD) (Verardi & Dehon, 2010). I found the...

22 July 2024 8,821 2 View

MDCI module in Orca software?

Dear Researchers, My question is associated with the "MDCI" method in Orca. Please let me clarify my question using a simple example: Suppose we are going to perform CBS extrapolation using "!...

21 July 2024 1,632 0 View

What is wrong with my input file?

im studing gaussian 16 with reading paper about I-131 Metaiodobenzylguanidine in the paper "In a similar vein, nuclear magnetic resonance shielding values were investigated using the widely...

16 July 2024 6,040 4 View

Figure plot in scientific articles?

Hi all, Do you know how to plot this figure? I found many of them in Nature journals but have not figured out how to make them. Which software/tool do you suggest? Thank you very much.

15 July 2024 8,384 2 View

Can it is possible to find the cleaved sequence when a protein cleaved by a heamaglutanin protease (HA/P) by any bioinformatics tools?

Bioinformatics tools like peptide cutter

15 July 2024 6,453 1 View

What is the difference between OTU and ASV analysis?

For microbiome data analysis

13 July 2024 4,542 2 View