Which bioinformatics tool is preferable to locate specific gene sequence in human genome?

More Rashadul Islam's questions See All

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Cancer biomarker and albumin.

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Can RFLP ditingush between carrier and affected people?

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Can I base on reverse DNA sequences to perform alignment, convert to amino acids and GenBank submission?

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How to confirm the site-directed mutagenesis result without performing NGS?

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Why did the authors extrapolate a phenotype that they experimentally proved in one bacterial strain across the whole genus of the organism?

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Why my colony PCR results of my recombinant bacterial not showing any results?

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Who of all the Global Scientific community will help me Prof. Dr. Yoshida make way for TPEOM, MEC ~EMC to return the atmospheric gases to the norma ?

TEP presentation caption (The Environmental Project) Re: Why should Washington’s DC, or any country government point of location think of as nowadays of as to being 'tomorrow as to come! if it...

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Which is more important: The human factor or the technological factor in combating climate change?

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Does anyone have issues using Prepman Ultra reagent for MicroSeq ID bacterial, fungal and yeast sample preparation?

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How is the bacterial genome's high protein count verified as genuine despite 800+ contigs and good metrics (98.55%completeness, 0.68% contamination)?

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What is the acceptable p-value cutoff for GO enrichment analysis ?

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Inquiry on Maximum Nucleic Acid Volume for 2.5 mL Liposome Solution?

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Howard Junca

First try: Blast http://blast.ncbi.nlm.nih.gov/Blast.cgi https://en.wikipedia.org/wiki/BLAST

Rashadul Islam

Thanks a lot for your kind attention but blast can't even evaluate data up to 1MB in size.

actually I want to align bacterial genome in human genome sequence. I mainly usad FASTA format.

Noel Cabañas

Hi, You can use locally Blast.

http://www.ncbi.nlm.nih.gov/books/NBK52640/

or align with mauve, BLASTZ, LASTZ.

http://darlinglab.org/mauve/mauve.html

http://www.bx.psu.edu/miller_lab/