where can I find free mouse brain CT/MRI or fMRI/PET scan images to load into 3d slicer ?
I would like to load some mouse brain images, I would like to eventually use the images to look at connectivity in normal and disease states by making a tractography image. Is there somewhere I can download open source data for this purpose? Also, is there somewhere I can find stereotactic coordinates in a 3D layout ?
cheers
Mary
Hi Mary, you can try one of these solutions:
https://resource.loni.usc.edu/resources/atlases-downloads/
SPM has a mouse brain template:
https://www.fil.ion.ucl.ac.uk/spm/ext/
I hope it helps you!
RF
Hey Mary,
You could try our data. It's co-registeted CT and MRI data of mice after radiation-induced brain injury (time series).
https://rodare.hzdr.de/record/915
Documentation:
https://github.com/jo-mueller/Slice2Volume_CodeAndDocs
But I have to warn you that the MRI resolution and quality is not optimal. It's open source, though :-) You can contact me in case any questions arise.
Best,
Theresa
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