So i have my two proteins and a protein linker all in PDB format. I need to combine them in as precise as possible way. What software would you suggest me to use? The orientation is not the most important part, i can trial and error until my orientation satisfies my parameters as i am doing corse grain simulations.
Sargol Mazraedoost
Hello
U can use
SWISS-MODEL, CHIMERA.
You can try the prediction on online I-Tasser server of Zhang's lab (http://zhanglab.ccmb.med.umich.edu/I-TASSER/)
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Nikhil Maroli
add linker between the units and model the protein using any homology modeling tools.
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