Danilo Boskovic

5 Questions 5 Answers 0 Followers

Questions related from Danilo Boskovic

What options do i have on predicting non-ligand bound conformation of a protein?

So i have two structures, both ligand bound, and i need to predict the structure of the ligand free molecule. To my knowledge it is not possible but i am quite at the beginning of understanding...

12 August 2019 7,243 2 View

What software to use to create fusion protein?

So i have my two proteins and a protein linker all in PDB format. I need to combine them in as precise as possible way. What software would you suggest me to use? The orientation is not the most...

10 July 2019 6,791 4 View

What is the most reliable tool to rebuild nucleic acid missing termini?

I have a nucleic acid that has bad termini. I can use Swiss Pdb viewer to reconstruct it but i wondered what is the most precise tool for it? Gromacs has no function to do that and charmm36 does...

24 June 2019 2,678 3 View

What is the most reliable tool to rebuild nucleic acid missing termini?

I have a nucleic acid that has bad termini. I can use Swiss Pdb viewer to reconstruct it but i wondered what is the most precise tool for it? Gromacs has no function to do that and charmm36 does...

06 June 2019 4,988 4 View

What are the minimum requirements for performing specific tasks in modeller?

I am interested in doing some in silico mutational analysis on a single loop of a 350-400 amino acids protein and test the mutants for docking (easier part). What would realistically speaking the...

12 December 2018 1,051 3 View