The aim of the study is to compare montane and lowland populations of a plant species with respect to leaf anatomy. The montane populations also include those situated on different altitudes. I collected 25 plant individuals from each population on a defined area: the whole plants as a herbarium material as well as the shoots with leaves (3 vegetative and 3 flower-terminated ones from each individual) as alcohol-fixed material. The plant is small-leaved and each individual contains dozens of leaves on both types of shoots.
Now the question is how many leaves of each individual to analyze anatomically and how many measurements of each particular quantitative trait (e.g., size and density of stomata, hairs, leaf thickness and size, etc.) to take from each leaf? Also, what would be the statistical methods most suitable to use in such a study? Thanks in advance.