Hello All

im trying to make docking using autodock and i have two questions

1 - i want know what is the use of "set up covalent map" option and how i select the proper atom?

2 - when i compare between theoritical Ki from autodock results and experimentally measured IC50 there is a big difference in values and the pattern too. i.e the experimentally most potent compound (IC50 in nano moles) has the highest Ki from autodock (in millimoles). how can i overcome this to make autodock results close to the experimental results