What is the best way to detemine the LD decay?

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Waseem Hussain

http://www.annualreviews.org/doi/pdf/10.1146/annurev.arplant.54.031902.134907.

https://dl.sciencesocieties.org/publications/tpg/abstracts/1/1/5

these links may provide answer.

Awais Rasheed

Logistic regression module implemented in XLSTAT is best way to determine LD decay. The predicted R2 value of 0.2 will give you exact distance of LD decay.

Dina Abdulmajid

I have same problem, i have the data for LD from Tassel for all subpopulations but i could not do the LD decay plots

can you help me@@

Shu-Yun Chen

I calculated the LD by using package "genetics" in R for random selected SNPs I have, it took some time but worked.