The researcher faces a lot of problems when conducting the research, some of them related to the sources of research, and the other is related to the method of data collection
apart from getting grants and other stuff, the biggest problem for a researcher is to win the rationale of his research in his brain. That is to believe in the core concept of the research question
What are the most important challenges facing the researcher?
For me are both the data collection & writing up the discussion section. Reason being data collection generally take the longest duration & require many follow-ups with respondents compares to my other research activities. Discussion section of my manuscript also require much more attention & effort to complete.