would someone please describe me what commands must have used in Cygwin for molecular docking. When I enter "tail" command the program cant open the file. I attached a screenshot of the commands. I appreciate if someone help me to solve this problem.
I am not sure that you need to include .exe after autogrid4 since Cygwin is a linux-like environment (and you don't type in .exe in linux). It seems like the *.glg file was never created because autogrid4 was not run.
Perhaps you will have success with typing: autogrid4, ./autogrid4, or ./autogrid4.exe
I predominately use AutoDockTools to generate the grid box centering and dimensions and type them directly into the shell without the use of a gridbox file and never have issues with AutoDock and Vina.
Dear Carter & Mathew, thanks for your guiding
actually as you mentioned the size of the *.glg file is near 0 and I'm trying to perform docking from the beginning. could you please introduce me or attach any helpful paper or tutorial? maybe I've made mistake in the previous steps.
Hello
I am getting same problem in molecular docking using cygwin (after the AutoDock). when I giving the command " tail -f filename.glg& " 'tail can not open' this error seen after the command. Would some one help he to sole this error/problem.
- Badges
- Science topic
- Similar topics
- Biological Science
- Molecular Cell Biology