I have a fasta file with >3000 sequences and i want to find out, if there are any glycosylation sites and if yes, where in the sequences they are located. I downloaded the ps_scan.zip and tried to work with the command line to analyze my sequences. But sadly i really don't know how the commandline tool works, even the readme file is hard to understand.
Does anyone know how to use this tool or wich command i need to analyze all sequences in the file?
Desar Janik Raschke
This might be useful for you.
https://prosite.expasy.org/prosuser.html
Does it have to be in command lines? Maybe if you can find a visual way... Even though you need to track the sequence down... Even programmes like RasMol or Chimera have a command line for the sequence. Maybe the instructions are there and easy to follow
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