I installed PhyML.3.1 version on my pc (windows). But I cant execute my files. I used phylıp format and nexus format but its didnt execute.
phyml.exe, phyml.bat and my sequences files in the same directory.
What is the problem?
Eğer istersen ben yardım ederim sana
Use RAxML online version
https://raxml-ng.vital-it.ch/#/
There is really no way otherwise to figure out what might be the problem.
I aligned IGS1 sequences via MEGA software but there are a lot of indels in the dataset. I should use Seqstate program (Indelcoder) for recodes the gaps. However I didn't download this software...
11 December 2018 1,201 2 View
I amplified fungus DNA and run in the 1% agarose gel. I prepared agarose gel with Gelred dye. However, I saw smear bands. What is the reason of this smear bands? I give amount of pcr reagents...
06 July 2018 8,163 21 View
I extracted genomic DNA from macrofungi with CTAB method. In the chloroform step, I saw a yellow layer on the top layer (see pictures, I showed it with number 3). What is it the reason for this? I...
06 July 2018 9,807 4 View
I am working on phylogeny of fungi. I amplify IGS1 region but I can not aligned IGS sequences because there are lots of indels. Which programme can I use for aligned and phylogeny? How should I...
04 May 2018 9,667 5 View
I am working on phylogeny of fungi. I amplify ITS region and get sequences. However the sequences are consistently bad nowadays. I didn't resolve this problem? I can not find the cause of the bad...
04 May 2018 2,782 6 View
I am looking for a journal for my master paper. The scope of my paper is molecular biology and fungus taxonomy. I think, my paper can be published a sci-exp journal. So, I need your suggest..
02 March 2018 9,360 3 View
Excessive rotation of nodes in node set ErrNodeExcessRotation-Step1
17 August 2021 0 0 View
20 June 2021 0 0 View
--> FOAM FATAL ERROR: Maximum number of iterations exceeded From function Foam::scalar Foam::species::thermo::T(Foam::scalar, Foam::scalar, Foam::scalar, Foam::scalar (Foam::species::thermo::*)(Foam::scalar, Foam::scalar) const, Foam::scalar (Foam::species::thermo::*)(Foam::scalar, Foam::scalar) const, Foam::scalar (Foam::species::thermo::*)(Foam::scalar) const) const [with Thermo = Foam::hConstThermo >; Type = Foam::sensibleEnthalpy; Foam::scalar = double; Foam::species::thermo = Foam::species::thermo >, Foam::sensibleEnthalpy>] in file /home/ubuntu/OpenFOAM/OpenFOAM-4.1/src/thermophysicalModels/specie/lnInclude/thermoI.H at line 66. FOAM aborting #0 Foam::error::printStack(Foam::Ostream&) at ??:? #1 Foam::error::abort() at ??:? #2 Foam::heRhoThermo >, Foam::sensibleEnthalpy> > > >::calculate() at ??:? #3 Foam::heRhoThermo >, Foam::sensibleEnthalpy> > > >::correct() at ??:? #4 ? at ??:? #5 __libc_start_main in "/lib/x86_64-linux-gnu/libc.so.6" #6 ? at ??:?
24 March 2021 0 0 View
Hello, good day! I am trying to simulate similar bimorph piezoelectric harvester with below commands. However, the output power doesn't change with resistor value. Please help to find the reason. ET,10,CIRCU94,0 !SET UP RESISTOR R,1,100000 !RESISTANCE VALUE TYPE,10 !SET ELEMENT TYPE E,1,2 !CREATE RESISTOR BETWEEN NODES 1 AND 2 Thanks in advance Regards,
02 March 2021 0 0 View
Hello, I'm fairly new to ARENA and I have the following problem: I have two queues in which, in each queue, a different order type arrives (both having an arrival rate of exponential 10). Order...
02 March 2021 2,431 3 View
Hi, I am trying to construct a multi-layer fibril structure from a single layer in PyMol by translating the layer along the fibril axis. For now, I am able to use the Translate command in PyMol...
02 March 2021 4,569 4 View
I am wanting to calculate the average trend in maximum annual NDVI in Iceland from 2010-2020 using MODIS MYD13Q1 V6. How would I do this? I have currently inserted the NDVI bands from the MODIS...
02 March 2021 752 2 View
During a computational analysis, I found that for a protein of a plant, two different subcellular localizations are seen using CELLO and WoLF PSORT. For example, in CELLO, it identified the...
01 March 2021 6,729 2 View
I have used the i-Tasser several times, however it has been unavailable for several days. I tried the swiss-model, but the output was not very pleasant due to the model used. Is there any other...
28 February 2021 4,521 3 View