Dear, I have downloaded the TCGA data from AML. I would like to process the data (preferrable without using R) in order to obtain the expression levels from mRNA and I would like to know the corresponding patients data: e.g. treatment... among others. Thank you!!!
Hello
see this links , i hope help you
Good Luck
http://www.nature.com/nmeth/journal/v11/n6/full/nmeth.2956.html?WT.ec_id=NMETH-201406
http://tcga-data.nci.nih.gov/tcga/findArchives.htm
https://tcga-data.nci.nih.gov/tcgafi...cga4yeo/tumor/
https://wiki.nci.nih.gov/display/TCG...+Specification
http://health.bsd.uchicago.edu/yji/TCGA-Assembler.htm
Dear Stephany,
It is nice that you want to try to process TCGA's data without using R programming, but indeed you wrote 'preferable' ;-) So if have understood well you are interested in a comparison in survival analyis level using both gene expression and clinical data and informations related to treatment (like drugs)?
You can try our new package TCGAbiolinks
dataClin
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