I am working on microbial contamination of groundwater, and analyzing the pathogenic bacteria (more than ten), Since I am not into bioinformatics, but I am too curious to apply any such tool to include in my research. Seeking for suggestions..
Ashwani, if you could explain a little about what you want then it would be easier to suggest an apt tool.
Dear shrijit ,
As I said, bioinfo. is totally strange to me, so I would like to have suggestions from the experts. I have characterized several strains of bacteria, (as my work is ground water contamination with bacteria), what are the bioinformatic tools and approaches I can use with those microbes as add-on to my research ??
Dear Ashwani, If you have identified peculiar organisms, you can approach for their phylogenetic analysis.
Well Ashwani, why I asked you to explain was because you had just mentioned that you wanted to analyze the pathogenic bacteria. Analysis of what... their phylogeny?.. their interactions???... their genes/proteins etc....
P.S. my name is spelt as Sreejith and not Shrijit :-)....
Hi,
There is this link in the EBI website about some real world applications on bioino. You may find it useful.
http://www.ebi.ac.uk/2can/bioinformatics/bioinf_realworld_1.html#2.7
Just to give you a little bearing, follow the link below to the EMBOSS home page. It contains a short list of programs that you may use, to analyze data.
http://emboss.sourceforge.net/apps/cvs/emboss/apps/index.html
Again, as Sreejith said, if you can tell us what you'll be analyzing, we can help you out even more.
Kind regards,
PH
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