Dear All,
I am searching for a tool or an R/python Script that can take two nucleotide sequences as inputs and test if where they are complementary to each other. More specifically, one of these are piRNA and the other is a viral genome part, and I would like to know if the piRNA can target (can complementary bind to ) any part of viral genome..
Any help ?
Article Svist4get: A simple visualization tool for genomic tracks fr...
https://cpb-us-w2.wpmucdn.com/u.osu.edu/dist/0/72768/files/2019/08/201908BIB-Clustering-and-classification-methods-for-single-cell-RNA-Seq-data.pdf
Article Advances in Visualization Tools for Phylogenomic and Phylody...
Have a look at the R library biostrings. You can use reverseComplement() to get the reverse complement of a sequence and matchPattern() to find matches (possible binding sites).
- Badges
- Science topic
- Similar topics
- Computer Science and Engineering
- Programming Languages
- Python