Why is the Coot real space refine zone indicator green even in regions where the model has no density support? Doesn't this indicator combine both stereochemistry and density parameters?
Jorgaq Pata
No, the ´traffic lights´take into consideration only the refined geometry types, so it is based on the model and not on the quality or presence of the density. It is up to you to decide whether your density is good enough to build on it or rather delete parts of your model
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