I am looking for a more in-depth comparison in between these techniques with regards to the general analysis of compounds, if anyone could help?

Off the top of my head, pros of the qNMR would be the detailed structural information provided, the fact that it is non-destructive and less expensive when compared to the MS and that it requires a single standard to quantify many components.

Cons of the qNMR would be the poor sensitivity and the fact it can only be applicable to NMR active compounds... 

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