I converted my genepop file into BAPS file using CREATE. I have read the manual yet unable to understand how to proceed further. Any recommendations would be helpful.
Were you able to run it? If not, have you tried running Admixture, Structure or fastStructure?
I hope this tutorial may help you:
http://membres-timc.imag.fr/Olivier.Francois/tutoRstructure.pdf
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