I did docking process to find out the active site of recector molecule then I want to optimize the result using ONIOM in gaussian 09. How can I make input file in ONIOM from the result of docking process?
When you use Job inputs, add layers. Enzyme active site can be given first layer with high level of theory and other layer you can use low level of theory (mean small basis sets etc).
I want to ask again, how to make ONIOM input file from PDB file which contains residue amino acid and ligand? I have tried to make ONIOM input file from PDB but I got error. The following I attach the files error that I always got.