I'm seeking a tutorial for the new version of RIP-Seq/ChIP-Seq data analysis using Partek Flow. The YouTube tutorials are outdated, so I'd appreciate any up-to-date resources you can share to help me analyze my data.
This video is for Analyze RNA-Seq Data in Partek Flow.
But I have to analyze RNA Immunoprecipitation sequencing (RIP seq) data using Partek Flow, focusing on an alternative method to peak calling, typically done by software like MACS, which requires a license that I do not possess. So, I have to use Dseq2 to run for quantifying the fragments and compare them to the input by Partek Flow. Then do comparison cross groups to know to pull down, specifically by adding antibody, then compare them with input. I would like to know how do peak calling by Dseq2 method in Partek Flow, in those regions that particularly RNA rich with antibody.