What I need is a really simple program for fast-and-dirty estimates, and I am not interested in complex programs that are doing semi classical and/or quantum calculations. Just a small molecule in vacuum, and a model based on balls-and-springs with analytical mechanics treatment - but in 3D, please.

If not in 3D, a 2D treatment will be OK, as well

I do remember that I have seen such a package (free!)  for modelling and fitting IR spectra to structural information of simple/small molecules. I think that was a product of a Ph.D. project. I do not remember any names, unfortunately.

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