I have docked two interacting proteins and get a pdb file, now I want to know the prediction of binding residue sites by this docked pdb file. Please suggest me some bioinformatic tools for this.
One can use HADDOCK wherein you could provide residues that are involved in interaction.
http://www.bonvinlab.org/software/haddock2.2/
Thank you Vishal, I already docked proteins by Haddock and get pdb files now I want to analyse it by another tool for predicting binding residues.
Thank you Pritam
You can use http://zdock.umassmed.edu and provide residues, best in standalone version on Linux.
Thank you Ropon
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