Hi,

if you want a standalone software (not a web based solution) you can use our software (MACSE) dedicated to coding sequence alignment and management:

http://bioweb.supagro.inra.fr/macse/index.php?menu=releases&option=releases

java -jar macse_v1.01.jar -prog translateNT2AA -seq myseqDNA.fasta -out_AA myresAA.fasta

Note that you can indicate the genetic code to be used (option -gc_def) if the standard one is not adapted for your sequences (e.g. in case of mitochondrial DNA). The list of genetic code is available in the main help page of the software obtained by the command java -jar macse_v1.01.jar.

I hope you will find MACSE useful. Do not hesitate to contact me if you face any problem when using this tool.

http://bioinformatics.picr.man.ac.uk/research/software/tools/sequenceconverter.html

It is an internet based resource. It also gives you the option to chose frames.

blastx is another tool at NCBI that searches protein database using a translated nucleotide query.

If you are interested to do so without internet then google for any downloadable tool.

Use" Emboss"

http://emboss.sourceforge.net/

Those listed above all work well, as does http://web.expasy.org/translate/

Hi,

if you want a standalone software (not a web based solution) you can use our software (MACSE) dedicated to coding sequence alignment and management:

http://bioweb.supagro.inra.fr/macse/index.php?menu=releases&option=releases

java -jar macse_v1.01.jar -prog translateNT2AA -seq myseqDNA.fasta -out_AA myresAA.fasta

Note that you can indicate the genetic code to be used (option -gc_def) if the standard one is not adapted for your sequences (e.g. in case of mitochondrial DNA). The list of genetic code is available in the main help page of the software obtained by the command java -jar macse_v1.01.jar.

I hope you will find MACSE useful. Do not hesitate to contact me if you face any problem when using this tool.

There are several tools, among them the few I use are as follows.

http://reverse-complement.com/translate-protein/ROOT/

https://www.ebi.ac.uk/Tools/st/emboss_transeq/

In addition to the ExPASy given by others.