I'm using Mirdeep2 to determine the transcript abundances of Mirna, however I've been working with single-end data and only getting counts from the forward strand. Are there any options in Mirdeep2 to get counts from the reverse strand? Are there any tools to determine the abundance of Mirna from the deep sequencing data?

i am using linux

i tried these tools mirdeep2, miranalyser, salmon, rsem, kallisto but nothing gave me promising results.