While literature survey I found DarkHorse which can predict horizontal gene transfer (HGT) Candidate Resource from bacterial and archaeal genomes. I want to know if my candidate proteins has been transferred via HGT either from prokaryotes or eukaryotes. Therefore, I am looking for similar online tools to predict horizontal gene transfer in plants.
You can use Alienness:
http://alienness.sophia.inra.fr/cgi/index.cgi
Publication available here:
http://www.mdpi.com/2073-4425/8/10/248
It works for HGT or any origin to any destination.
If you need help, with this tool, do not hesitate to ask.
Thank you Neha. I have read this paper before. I am actually looking for the online tools like Darkhorse and METAtiger.
Dear Sunil,
You can easily check the GC content of the gene putatively transfer and compared with the surrounding sequences.
You can use Alienness:
http://alienness.sophia.inra.fr/cgi/index.cgi
Publication available here:
http://www.mdpi.com/2073-4425/8/10/248
It works for HGT or any origin to any destination.
If you need help, with this tool, do not hesitate to ask.
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