Is there any centralised repository for multi-scale computational models?

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Is there a freely available repository of time series data recorded from biological wet-lab experiments?

Time series of interest: Sequences of images where each image captures how the biological system is represented in space (e.g. Petri dish), sequences of concentrations for proteins/molecules of...

05 June 2014 122 1 View

Is there a reference paper describing the general framework/methodology for multiscale modelling?

By multiscale models I mean models which range across multiple spatial and/or temporal scales. I would be particularly interested if there is a methodology describing how to integrate submodels...

04 May 2014 4,140 3 View

Do you know any 2D chemotaxis computational models for which the simulations output is provided as an open dataset?

I have developed a new method for analysing how cells cluster over time and am interested in validating it against the "chemotaxis (2D)" case study. Time Series data is sufficient and therefore...

04 May 2014 2,636 3 View

Where could I publish a scientific note describing an algorithm in detail?

I have read a paper which presents a high level description of an algorithm. Some steps of the algorithm are described in natural language and are hard to reproduce when trying to implement the...

08 September 2013 5,955 4 View

MD MOE RMSD

How to calculate the RMSD values for a MD simulation using MOE?

07 August 2021 0 0 View

MD MOE RMSD

How to calculate the RMSD values for a MD simulation using MOE?

07 August 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

fatal error

16 June 2021 0 0 View

fatal error

16 June 2021 0 0 View

fatal error

16 June 2021 0 0 View

What is your perception on using visual analysis or quantitative approaches to evaluate data from single-case research designs (n of 1 trials)?

Results of single-case research designs (i.e., n-of-1 trials) are often evaluated by visually inspecting the time-series graph and computing quantitative indices. A question our research team is...

03 March 2021 687 1 View

What's the best way to measure growth rates in House sparrow chicks from day 2 to day 10?

What's the best way to measure growth rates in House sparrow chicks from day 2 to day 10? Since, the growth curve from day 2 to 10 won't be like the "Logistic curve" it might not follow logistic...

03 March 2021 1,401 3 View

After a reference from Int J Body Compos Res, can any body help?

Hi, I am after the reference below, my library says it cannot obtain a copy either locally or internationally, any help appreciated! Chris Wang ZM, Heshka S, Wielopolski L, Pi-Sunyer FX, Pierson...

03 March 2021 6,193 1 View

What techniques can I use to determine the miscibility of polymer blends?

The term miscibility refers to the single-phase state in thermodynamics. I do not mean the compatibility of different components. To determine the miscibility I know several techniques such as...

03 March 2021 4,107 4 View

Nicola Lai

You can also take a look a these database:

-http://models.cellml.org/cellml

-http://www.ebi.ac.uk/biomodels-main/

Ovidiu Pârvu

Following on from the previous answer one of the international initiatives aiming to build a multiscale whole-body model for humans is the IUPS Physiome project.

Models made available so far from this project: http://www.physiome.org/Models/index.html (I would recommend the Consolidated Models Database)