Is there any available Protein-Protein Docking MD simulation protocol by Gromacs software ?

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Which solution reveals the microstructure and features of nickel-based alloys?

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Which is the most convenient manufacturing software for Additive Manufacturing?

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Which is the best place in the world for the plant biotechnology research?

I am searching for a good place for the Post Doc,

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Which SAR dataset to use for generating coherency matrix and performing target decomposition (Description) ?

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How does one access the Cranet survey data on HRM practices?

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Genome-wide gene identification protocol ?

Is there any book chapter/book, webpage or research article available to understand genome-wide gene identification?

28 February 2021 8,095 1 View

Can the problems of overfitting be solved without cross validation?

For an overfit data set the cross validation error will be much bigger than the training error. Is it true or false?

23 February 2021 3,616 2 View

Research Gate Does it help researches to publicize their scientific work ?

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How to extract water soluble amino compound from after aqueous work up?

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How to Study a proton NMR of Graphene prepared by Electrochemical Exfoliation technique?

I performed a Proton NMR of graphene powder prepared by electrochemical exfoliation technique. It shows some peaks. But I can't understand it.

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MD MOE RMSD

How to calculate the RMSD values for a MD simulation using MOE?

07 August 2021 0 0 View

MD MOE RMSD

How to calculate the RMSD values for a MD simulation using MOE?

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fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

fatal error

16 June 2021 0 0 View

fatal error

16 June 2021 0 0 View

fatal error

16 June 2021 0 0 View

How to analyze a particular region of my simulation box in GROMACS?

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What kind of fluid could I use for a pitfall trap that also does not invalidate molecular testing?

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Arena simulation - how do i model the following model in ARENA (see description) (new to ARENA)?

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Why are the velocities so high in my Boussinesq approximation Fluent simulation?

Hello, I have a mechanism where air rises due to convective flows. In this simulation, nothing is driving the air except this. I understand that the Boussinesq approximation only works for small...

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Anwesh Pandey Popular answer

Visit this website:

http://mdtutorials.com/gmx/ and find suitable tutorial as per your requirement.

Yogesh Kumar

@Dear Vikram Dala Please elaborate your answer. Your said to follow native gromacs steps, how gromacs will generate topology and by which command. Please suggest command or tutorial, it will be great help for me. Thank you in advance