I want to generate bar graphs depicting log fold changes in gene expression following qPCR experiments. I have Ct values, dCt values, means, SE, and ddCt values.
Is there a way to analyze this data including doing the calculation in GraphPad?
Yes, Prism is a great program for statistical analysis and graph drawing. Use the data in your New table & graph section to do this. You can also use the software training data in the use tutorial data section. Prism will automatically plot your charts.