Is there a tool for analyzing regulatory FBA i.e integration of transcriptomics with FBA?

25 October 2014 1 2K Report

Is there an online or standalone tool for analyzing flux balance analysis of E.coli gene knockouts which also considers the regulatory controls ex. RFBA, SRFBA, PROM etc.?

Sepideh Moshtagh

Take a look the a the link below.It may come handy. You must first choose the metabolic network you want for example E.coli in your case. Then you can perform FBAonline, But I think Matlab Cobra toolbox is a better choice although it's not online

http://seed-viewer.theseed.org/seedviewer.cgi?page=ModelView

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