I need to perform some ancestry analysis and I'd like to use the individuals from 1000 genomes as proxies for the test.
Hi, the complete dataset underlying the browser can be downloaded in different formats, or accessed through their data slicer tool.
The 1000 genomes DataSlicer tool is available here; http://www.1000genomes.org/data-slicer.
And raw dat file locations are listed here; http://www.1000genomes.org/data
From your question I think vcf files with genotypes are what you are looking for, which are available here;
ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/release/20110521/
The files can be downloaded per chromosome and using tabix (http://samtools.sourceforge.net/tabix.shtml) you can extract the desired genomic positions.
Answers to these types of questions are often also listed on the projects FAQ page;
http://www.1000genomes.org/faq
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