I am inexperienced with DAPI or Wolbachia, and I want to use Wolbachia infection as a measure of efficiency of some antibiotic administration to an insect colony.

I am afraid of using only PCR as a control for presence of Wolbachia, as this insect has no sequenced genome, and the Wolbachia just might have been horizontally transferred into the insect's nuclear genome. Thus I want to use some simple microscopy technique to detect Wolbachia, and I have been told DAPI is useful, but I am not sure if DAPI will also dye mitochondria in insect cells (which would look identical to any other endosymbionts).

Any ideas on this from more experienced people?

Many thanks

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