Is anyone using PATHWAYS for VMD?

21 May 2021 0 9K Report

I've generated structures from a copper-nitrite reductase/pseudoazurin docking using CLusPro. I need to evaluate the ET between two copper centres: one of them is located at the pseudoazurin (electron donor) and the other one at the domain I of a copper-nitrite reductase. I recognize two putative ET pathways, so I want to evaluate them. Any help would be greatly appreciated.

Badges
Science topic

Similar topics
Psychology
Emotion

More Felix Martín Ferroni's questions See All

How effective is the Citi Bloc standard basket in enhancing the accuracy and comparability of international construction cost assessments?

Citi BLOC Standard Basket Definitions: A standardized unit representing a fixed basket of construction materials, labor, and equipment costs priced in various cities. Purpose: To create a common...

04 August 2024 8,997 1 View

How long takes to a batholith to crystallize?

How long would it take for a 'normal' granitic batholith to crystallize? Are there any calculations on it?

12 July 2024 7,436 0 View

How will you write a literature review on impact of galamsey on agricultural land in Ghana?

A research proposal on impact of galamsey on agricultural land in wassa

12 July 2024 6,478 3 View

Why my comet have halo shape in comet assay ?

Hello every one, I am trying to perform comet assay. But my comet look like halo (cf pictures) and I have no idea why. Anyone has the solution ? I use the protocol and reagents from biotechne :...

24 June 2024 4,184 0 View

What are the key factors influencing the adoption and implementation of Building Information Modeling (BIM) in sustainable construction projects?

What are the key factors influencing the adoption and implementation of Building Information Modeling (BIM) in sustainable construction projects, and how do these factors impact project...

14 June 2024 202 4 View

How do financial ratios influence decision-making processes in construction management?

Financial ratios are critical tools in assessing the financial health and performance of construction projects and companies. Understanding their influence on decision-making processes is...

14 June 2024 1,639 3 View

How can zoning policies and urban development regulations be optimized to promote vertical development and enhance land use efficiency?

Understanding how zoning policies and urban development regulations can be optimized to promote vertical development and enhance land use efficiency is crucial for addressing the challenges of...

14 June 2024 6,311 12 View

What is urban noise pollution abatement management in details?

I need a clear and concise explanation

06 June 2024 6,682 3 View

Exist design guidelines for full-scale aerobic granular sludge process?

Are there any (national) technical guidelines for the process design of a full-scale water resource recovery facility applying the aerobic granular sludge process? The guideline should emphasize...

30 May 2024 9,287 1 View

How project management is impoertant in the development of the country?

22 May 2024 3,480 2 View

How can I prepare virus for a TEM or SEM imaging?

I have virus (viral hemorrhagic septicemia virus) in suspension and the experiment will not involve cells. What level of TCID50 is preferred?

11 August 2024 3,115 1 View

1. If I can quantize the atom using this hyperbolic spiral and classical physics, could nature do the same?

If we map as a continuous motion an ionising electron (beginning its journey at n=1) in an H atom, a specific hyperbolic spiral appears (see animation). When we solve this spiral formula, we find...

07 August 2024 5,343 2 View

Is there anyone with experience in TEM analysis who can assist with a manuscript for an upcoming journal?

Hello dear colleagues, We have prepared a manuscript on NiTi-based alloys and are seeking a second opinion on our current TEM results. If you are a Ph.D. holder with experience in TEM and have...

07 August 2024 9,563 0 View

Why do i have a weak plasma and no coating during rf sputtering?

I have been getting a low plasma and no coating while doing rf sputtering of copper doped ZnS using a power of 140 watts and at pressure of 6.5x10-3 Mb.

07 August 2024 4,526 4 View

Microtome tissue sectioning - How to prevent chatter of paraffin tissue specimen sections?

Hello everyone, I have recently started using the microtome device for sectioning of paraffin-embedded mice lung. While I had some success in sectioning and observing proper ribbons, some of my...

06 August 2024 666 4 View

Do you have good tips for seaweed tissue preservation in the field for post RNA extraction?

I will be with my students collecting seaweed samples in a marine farm and later we will process this tissue for RNA isolation and further sequencing. Does anyone have tips on how to collect the...

04 August 2024 501 2 View

How to Add Missing Water Molecules in Protein-Membrane Simulations?

I have protein-membrane simulations (PDB, PSF, DCD) and have noticed that water molecules near the protein are not visible in the simulations. How can I fix this issue? Is there a way to place the...

04 August 2024 1,200 2 View

Which distribution type should I use when calculating the average particle size from TEM image? and how to calculate the error ?

average particle size calculation from TEM

04 August 2024 2,921 1 View

Why reactivity isn't increased with more empty spots in valence shell?

If from a geometric perspective the non-halogens, non-noble gases have more empty spots in their valence shell, and the filling/exiting of any of the empty spots in the shell constitutes a...

03 August 2024 4,787 2 View

Why is the molecule's orientation with an electric field affect polarizability?

Why is the molecule's orientation with an electric field affect polarizability? Electrons are diffuse enough to be independent with respect to orientation and effect of electric field on...

03 August 2024 7,843 1 View