Dear all,
When I perform a search in Maxquant and I select a post-translational modification as variable, I get a special table with the data for that modification. I have technical triplicates of 2 conditions, so 6 samples. The output table has 7 columns for "ratio mod/base peptide"; 1 without additive (I call it the general column) and 1 for each of the samples. How are the values in the general column calculated, because they are not the average, nor the median of the other 6 columns?
Thanks for your help!
Cornelia