If First three PC explains only 40% variation, should i go for Kinship?
This link (free) may be useful to the analysis of population stratification, in general, the ten highest PCA may be included as covariates.
http://doc.goldenhelix.com/SVS/latest/svsmanual/principal_component_analysis.html
And this other link to GWAS eBook (free):
http://goldenhelix.com/resources/ebooks/GWAS.html
Two papers I suggest you to read:
Article Correcting for Population Structure and Kinship Using the Li...
Article New approaches to population stratification in genome-wide a...
François
Thank you very much for your kind replies
You are welcome Dr. Ajit and Dr. Dharminder
My best regards
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