I mean, (I am not very familiar with protein-protein binding) can a drug accelerate (or oppose) the protein-binding?
If yes, then which p-p docking method should I follow (Which have a suitable scoring function)?
I think you can look at Hex protein-protein docking..................
GRAMM-X Protein-Protein Docking Web Server vakser.bioinformatics.ku.edu/resources/gramm/grammx/
Dear All, I want to do constant pH MD for an enzyme. For the analysis, I want to know, is there any way to calculate pH of static pdb structure? I have pKa (individual residue) and charge (whole...
02 March 2018 4,194 8 View
Dear all, For my research, I need the 3D structure of the sodium channel. Can anyone guide me how to make the complete strucutre for sodium channel?
02 March 2016 8,720 1 View
Dear All, I want to if there is any protocol available to simulate and analyze the entry of a drug to a binding pocket of a protein as well as binding at that position. All I could find is the...
08 September 2014 4,689 3 View
Can someone please explain how computers identify rings and chains (and complete structure) from a Coordinate file (PDB or Mol2)?
03 April 2014 2,807 5 View
Can any guide me with the process of installing Gromacs on Windows? Please note that I have Cygwin installed and on my system FTP is blocked.
11 December 2013 9,009 0 View
My team and I finished a couple of projects in Cancer informatics (Drug Designing). We want to publish them now, but, a fairly good computational bioinformatics journals, were quoting us a hefty...
08 September 2013 2,501 9 View
"PUBLISHING IN A SCOPUS JOURNAL" Researchers are now at a cross road. The critical need to publish in a Scopus or ISI, etc journal is ever vital. Journal Publication fees must be submitted....
10 August 2024 8,621 1 View
Hello everyone, I am currently developing a thesis proposal and would appreciate your input on its viability and how to effectively carry it out. My proposed topic is: "Does the perceived threat...
10 August 2024 8,992 0 View
Who will bear moral responsibility for the deaths of thousands of people in the event of an earthquake? Weeks and months remain before the onset of strong earthquakes that bring death to...
08 August 2024 6,134 12 View
There are a huge number of methods for studying objects in space, according to the senses (and not only). Mechanical, thermal, optical, acoustic, electrical, magnetic, based on particle beams,...
06 August 2024 7,102 0 View
Hi, I know that low molecular weight (MW) molecules generally tend to have higher mobility, while high molecular weight molecules tend to have lower mobility. However, in my experimental...
06 August 2024 1,495 2 View
After immunohistochemistry of previously fixed in PFA and EtOH and then frozen 20 μm sections of zebrafish brain, DAPI staining is very weak (right) compared to the same sections stained without...
05 August 2024 9,637 2 View
I aim to be as skeptical as possible regarding whether a pair of orthologous genes results in the same phenotype in their different but related bacterial organisms under similar environmental...
05 August 2024 6,787 4 View
Brain and body mass together are positively correlated with lifespan (Hofman 1993). The duration of neural development is one of the best predictors of brain size, and conception is the best...
05 August 2024 6,247 3 View
In the case of a wound l recurrence after radical breast cancer and sentinel lymph node biopsy. Are the sentinel lymph node procedure recommended? If no axillary lymph node dissection was not...
05 August 2024 8,056 1 View
kindly reply me. Thanking you in advance.
05 August 2024 7,727 4 View