You can do the analysis using GC-MS if it is non-polar fraction and you are comparing with some know compounds in literature.
Sine it is methanol fraction (polar fraction); one need to do LC-MS and compare with known compounds database.
If you are expecting a new compound then the other method is activity guided fractionation of crude extract followed by identification of purified compound using IR, NMR, MASS, CHN etc.
Identification of unknown compounds from the crude methanolic plant extract may be done using GC-MS analysis (qualitative) by comparing data with the NIST & Wiley library..
You can do the analysis using GC-MS if it is non-polar fraction and you are comparing with some know compounds in literature.
Sine it is methanol fraction (polar fraction); one need to do LC-MS and compare with known compounds database.
If you are expecting a new compound then the other method is activity guided fractionation of crude extract followed by identification of purified compound using IR, NMR, MASS, CHN etc.
It depends on your plant extract because the every test materials by LC-MS or HPLC, GC-MS give different, molecular weight and structure of the components .
If you want to identify unknown compounds, which is absent in library, the best will be LC/MS/MS with TOF or Orbitrap. They have special software for identity new compound.
If you have idea what group of substances you have, you should check library (NIST or similar) and try to use coumpound standard.